 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
||||||||||||||||||
|
||||||||||||||||||
| Core facility | Location | Contact |
|---|---|---|
| 808 PCTB | Francisco Martinez Murillo, PhD. | |
| 418 N Bond Street, Suite 301 |
Telephone: 410-955-7327; email cancerarrays@jhmi.edu | |
| Ross Building, Room 943 | Tel: 410-502-6920; email microarray@jhu.edu |
| Repository | Comment |
|---|---|
| From Stanford and the University of California at Berkeley and at San Francisco | |
| From Alvis Brazma and colleagues at the EBI | |
| From the Whitehead Institute | |
| At Harvard; relational database containing yeast RNA expression data. | |
| From Biodiscovery | |
| From Silicon Genetics | |
| From NCGR | |
| Gene Expression Omnibus from NCBI | |
| From the Jackson Laboratory | |
| National Cancer Institute | |
| The University of Manchester | |
| U. Pennsylvania | |
| Stanford University | |
| A listing of databases from MGED |
| Microarray Gene Expression Data Group - MGED | The MGED group is a grass-roots
movement whose goal is to facilitate the adoption of standards for DNA-array
experiment annotation and data representation, as well as the introduction
of standard experimental controls and data normalization methods. There
are four major standardization projects being pursuing by the group: MIAME - The formulation of the minimum information about a microarray experiment required to interpret and verify the results. MAGE - The establishment of a data exchange format (MAGE-ML) and object model (MAGE-OM) for microarray experiments. Ontologies - The development of ontologies for microarray experiment description and biological material (biomaterial) annotation in particular. Normalisation - The development of recommendations regarding experimental controls and data normalization methods. |
| Tool | Description |
|---|---|
| A suite of tools for microarray data analysis | |
| Bioinformatics Software Solutions | |
| Database server for microarray data | |
| Array analysis software | |
|
|
| Database tool for microarrays | |
| Cluster Analysis of Gene Expression Dynamics | |
|
|
|
| Company/product | Description |
|---|---|
| Statistical and data mining software | |
| Array analysis software from Gene Network Sciences | |
| Microarray data analysis software from Iobioninformatics | |
|
Data mining software |
| Data mining software | |
| Photoretix Array Database and software | |
| Bioinformatic products and services (SilicoCyte) |
| Company | Product |
|---|---|
| GeneChip | |
| Atlas arrays | |
| MICROMAX | |
| GeneFilters | |
| DNA Arrays | |
| Virtek ChipWriter Pro | |
| Pan Microarrays and Oligo sets | |
| ArrayVision; ArrayStat | |
| Automated Cellular Imaging System (ACIS) | |
| Data mining software | |
| Data mining software | |
| Links to image analysis software; data mining software; R packages for microarray data analysis; database and LIMS software |